Those scenes were shot in October 2006 in Morroco.
Amy doesn't have a lot of lines in the scene that follows. You can easily tell by watching it that Amy/Bonnie is full of respect for Tom/Charlie. "Just to be on that set and learn from these people and get to watch Philip Seymour Hoffman and Tom Hanks do these amazing scenes together, directed by Mike Nichols, it was for me like going to school.” adds Amy.
I'll post more video clips from "Charlie Wilson's War" later in another blog entry. Enjoy! :)